Publications

Quantification of transcript isoforms at the single-cell level using SCALPEL

Franz Ake, Sandra Maria Fernandez-Moya, Marcel Schilling, Akshay Jaya Ganesh, Ana Gutierrez-Franco, Lei Li, Mireya Plass

bioRxiv, 2024.06. 21.600022

Link: Full article: Quantification of transcript isoforms at the single-cell level using SCALPEL

Software: https://github.com/plasslab/SCALPEL

A distinct class of pan-cancer susceptibility genes revealed by an alternative polyadenylation transcriptome-wide association study

Hui Chen, Zeyang Wang, Lihai Gong, Qixuan Wang, Wenyan Chen, Jia Wang, Xuelian Ma, Ruofan Ding, Xing Li, Xudong Zou, Mireya Plass, Cheng Lian, Ting Ni, Gong-Hong Wei, Wei Li, Lin Deng, Lei Li

Nature Communications 15 (1), 1729

Link: Full article: A distinct class of pan-cancer susceptibility genes revealed by an alternative polyadenylation transcriptome-wide association study

scQTLbase: an integrated human single-cell eQTL database

Ruofan Ding, Qixuan Wang, Lihai Gong, Ting Zhang, Xudong Zou, Kewei Xiong, Qi Liao, Mireya Plass, Lei Li

Nucleic Acids Research 52 (D1), D1010-D1017

Link: Full article: scQTLbase: an integrated human single-cell eQTL database

Neural cell diversity in the light of single-cell transcriptomics

Sandra María Fernández-Moya, Akshay Jaya Ganesh, Mireya Plass

Transcription 14 (3-5), 158-176

Link: Full article: Neural cell diversity in the light of single-cell transcriptomics

Methanol fixation is the method of choice for droplet-based single-cell transcriptomics of neural cells

Ana Gutiérrez-Franco, Franz Ake, Mohamed N Hassan, Natalie Chaves Cayuela, Loris Mularoni, Mireya Plass

Communications Biology 6 (1), 522

Link: Full article: Methanol fixation is the method of choice for droplet-based single-cell transcriptomics of neural cells

Transplanting rejuvenated blood stem cells extends lifespan of aged immunocompromised mice

Sara Montserrat-Vazquez, Noelle J Ali, Francesca Matteini, Javier Lozano, Tu Zhaowei, Eva Mejia-Ramirez, Gina Marka, Angelika Vollmer, Karin Soller, Mehmet Sacma, Vadim Sakk, Loris Mularoni, Jan Philipp Mallm, Mireya Plass, Yi Zheng, Hartmut Geiger, M Carolina Florian

npj Regenerative Medicine 7 (1), 78

Link: Full article: Transplanting rejuvenated blood stem cells extends lifespan of aged immunocompromised mice

The X-linked splicing regulator MBNL3 has been co-opted to restrict placental growth in eutherians

Thomas Spruce, Mireya Plass, André Gohr, Debashish Ray, María Martínez de Lagrán, Gregor Rot, Ana Nóvoa, Demian Burguera, Jon Permanyer, Marta Miret, Hong Zheng, Maurice S Swanson, Quaid Morris, Moises Mallo, Mara Dierssen, Timothy R Hughes, Barbara Pernaute, Manuel Irimia

PLoS biology 20 (4), e3001615

Link: Full article: The X-linked splicing regulator MBNL3 has been co-opted to restrict placental growth in eutherians

Heterogeneity and cancer-related features in lymphangioleiomyomatosis cells and tissue

Roderic Espín, Alexandra Baiges, Eline Blommaert, Carmen Herranz, Antonio Roman, Berta Saez, Julio Ancochea, Claudia Valenzuela, Piedad Ussetti, Rosalía Laporta, José A Rodríguez-Portal, Coline HM van Moorsel, Joanne J van der Vis, Marian JR Quanjel, Anna Villar-Piqué, Daniela Diaz-Lucena, Franc Llorens, Álvaro Casanova, María Molina-Molina, Mireya Plass, Francesca Mateo, Joel Moss, Miquel Angel Pujana

Molecular Cancer Research 19 (11), 1840-1853

Link: Full article: Heterogeneity and Cancer-Related Features in Lymphangioleiomyomatosis Cells and Tissue

Software: [posar nom enllaç aquí]

RNA Dynamics in Alzheimer’s Disease

Agnieszka Rybak-Wolf, Mireya Plass

Molecules 26 (17), 5113

Link: Full article: RNA Dynamics in Alzheimer’s Disease

Software: [posar nom enllaç aquí]